CURRICULUM VITALE. Bahador Makki Abadi. Assistant Professor, PhD
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1 CURRICULUM VITALE Bahador Makki Abadi 2013 Assistant Professor, PhD Department of Medical Physics and Biomedical Engineering, Tehran University of Medical Sciences, Tehran, Iran
2 Research interests: Personal Information Name: Bahador Surname: Makki Abadi Date of Birth: 22/09/1975 Nationality: Iranian Marital Status : Married b.makkiabadi@gmail.com Position: Assistant Professor Department of Medical physics and Biomedical Engineering Tehran University of Medical Sciences Tel: Blind Source Separation (BSS) of biomedical signals (ECG-EEG-EMG-fMRI). Ultrasound signal processing and imaging techniques (with focus on Compressive Sensing theorem). Biomedical signal processing using array processing and tensor factorization based algorithms. Digital Signal processors (DSP chip-sets) and their application to biomedical signal processing and medical imaging. Brain Computer Interface (BCI). Computer vision techniques for medical image processing. Active Projects: Designing of a fundamental ultrasound diagnostic imaging system (Sonography/Doppler). Designing embedded H.264/H.265 video compression boards with application to telemedicine and telesurgery. Improving the previously designed Audio Cochlear Implant system (DSP processor part). Education: Ph.D., Tensor Factorization based Blind Signal Processing methods with application to Biomedical signal processing, The University of Surrey, Guildford, Surrey, UK Sept Jan o Thesis: New tensor factorization based approaches for blind source separation of biomedical signals. o Started at Cardiff University, from Sep to Dec o Transferred to the University of Surrey from Jan Jan M.Sc., Biomedical Engineering, Bio-Electric, Amirkabir University of Technology, Tehran, IRAN, GPA: 3.67 (4.0 scale) o Thesis Topic: Classification Of forearm multichannel EMG signals using Neuro-Fuzzy networks.
3 B.Sc., Electronics Engineering, Shiraz University, Shiraz, IRAN, , GPA: 3.41 (4.0 scale). Academic Awards Cardiff University o Overseas Research Students (ORS) Award, Cardiff University, o School of Engineering, Cardiff University Studentship, University of Surrey o Full Stipend, University of Surrey, Jan. -Aug o Studentship, Department of Computing, University of Surrey, Aug. -Nov Honors Ranked second for blind audio signal separation in the 2011 Signal Separation Evaluation Campaign (SiSEC2011) ( /94/PDF/Araki LVA12.pdf). Ranked second among M.Sc. Students of Biomedcal-engineering, Amirkabir University. Ranked 74 in nationwide university entrance exam in 1997 for M.Sc. Degree. Publications Journal papers: D. Jarchi, S. Sanei, J. C. Principe and B. Makki Abadi, A new spatiotemporal filtering method for single-trial estimation of correlated ERP subcomponents, IEEE Trans. On Biomedical Engineering, vol. 58, no. 1, pp , Jan B. Makki Abadi, M.H. Moradi, Classification of Forearm Multichannel Electromyogram Signals by a Self-Organized Neuro-Fuzzy Structure, Iranian Journal of Biomedical Eng., vol. 2, no. 2, pp: , Summer, B. Makki Abadi and S. Sanei, Blind Identification and Separation of Sources with Sparse Events using Tensor Factorization, Springer Journal of Signal Processing Systems, Special Issue in Machine Learning for Signal Processing. (Under revision) B. Makki Abadi and S. Sanei, Factorization Based Blind Identification and Separation of Nonstationary Seizure Signals, IEEE Transaction on Biomedical Engineering. (Under revision) B. Makki Abadi and S. Sanei, A Convolutive Blind Source Separation of Lung and Heart sounds, IEEE Transactions on Biomedical Engineering. (In preparation) B. Makki Abadi, D. Jarchi, and S. Sanei, Blind Separation and Localization of Correlated Brain Signals Using Tensor Models, IEEE Transaction on Biomedical Engineering. (In preparation) Published Book Chapter: S. Sanei and B. Makki Abadi, Tensor Factorization with Application to Convolutive Blind Source Separation of Speech, Machine Audition: Principles, Algorithms and
4 Systems, IGI-Global Pub., Edited by W. Wang, Conference papers: B. Makki Abadi and S. Sanei, Orthogonal Segmented Model for Underdetermined Blind Identification and Separation of Sources with Sparse Events, IEEE Workshop on Machine Learning for Signal Processing (MLSP), Sept. 2013, Southampton, UK. B. Makki Abadi and S. Sanei, Blind Identification and Separation of Sources with Sparse Events, IEEE Workshop on Machine Learning for Signal Processing (MLSP), Sept. 2013, Southampton, UK. B. Makki Abadi and S. Sanei, Factorization Based Blind Identification and Separation of Nonstationary Seizure Signals, IEEE International Symposium on artificial intelligence and Signal processing (AISP), Oct. 2012, Shiraz, IRAN. B. Makki Abadi, D. Jarchi, and S. Sanei, A new time domain convolutive BSS of heart and lung sounds, IEEE Internationl Conference on Acoustic, Speech, and Signal processing (ICASSP), Mar. 2012, Keyoto, Japan. B. Makki Abadi, D. Jarchi, and S. Sanei, Blind Separation and Localization of Correlated P300 Subcomponents from Single Trial Recordings Using Extended PARAFAC2 Tensor Model, The IEEE conference on Engineering in Medicine and Biology Conference (EMBC), Sep. 2011, Boston, USA. B. Makki Abadi, D. Jarchi, Vahid Abolghasemi, and S. Sanei, A Geometrically Constrained Multimodal Time Domain Approach for Convolutive Blind Source Separation, European Signal Processing Conf. (EUSIPCO) on Signal Processing, Aug. 2011, Barcelona, Spain. S. Ferdowsi, V. Abolghasemi, B. Makki Abadi, Saeid Sanei A New Spatially Constrained NMF with Application to fmri, IEEE conference on Engineering in Medicine and Biology Conference (EMBC), Sep. 2011, Boston, USA. D. Jarchi, B. Makki Abadi and S. Sanei, Instantaneous phase tracking of oscillatory signals using EMD and Rao-Blackwellised particle filtering, Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), May, Prague, Czech Republic B. Makki Abadi, Saeid Sanei and David Marshall, A k-dimensional Subspace based Tensor Factorization Approach for Underdetermined Blind Identification, Proceedings of the IEEE Asilomar conference on Signals, Systems and Computers (ACSSC10) CA, USA, Nov. 7-10, (INVITED PAPER) F. Ghaderi, B. Makki Abadi, J. G. McWhirter, and S. Sanei, lind source extraction of cyclostationary sources with common cyclic frequencies proc. 35th International IEEE Conference on Acoustics, Speech, and Signal Processing (ICASSP), Mar B. Makki Abadi, F. Ghaderi and S. Sanei, A new tensor factorization approach for convolutive blind source separation in time domain, European Signal Processing Conf. (EUSIPCO) on Signal Processing, Aug. 2010, Aalborg, Denmark. B. Makki Abadi, D. Jarchi and S. Sanei, Simultaneous localization and separation of biomedical signals by tensor factorization, IEEE Workshop on Statistical Signal Processing (SSP), 2009, Cardiff, UK. B. Makki Abadi, A. Sarrafzadeh, F. Ghaderi and S. Sanei, Semi-blind channel
5 estimation in MIMO communication by tensor factorization, IEEE Workshop on Statistical Signal Processing (SSP), 2009, Cardiff, UK. B. Makki Abadi, A. Sarrafzadeh, D. Jarchi, V. Abolghasemi and S. Sanei, Semiblind signal separation and channel estimation in MIMO communication systems by tensor factorization, IEEE Workshop on Statistical Signal Processing (SSP), 2009, Cardiff, UK. F. Ghaderi, S. Sanei, B. Makki Abadi, V. Abolghasemi and J. G. McWhirter, Heart and lung sound separation using Periodic Source Extraction method In proc. 16th IEEE Int. Conf. on Digital Signal Processing (DSP), Greece, V. Abolghasemi, S. Ferdowsi, B. Makki Abadi and S. Sanei, On Optimization of the Measurement Matrix for Compressive Sensing, European Signal Processing Conf. (EUSIPCO) on Signal Processing, Aug. 2010, Aalborg, Denmark. D. Jarchi, B. Makki Abadi and S. Sanei, A new spatiotemporal filtering method for single-trial ERP subcomponent estimation, European Signal Processing Conf. (EUSIPCO) on Signal Processing, Aug. 2010, Aalborg, Denmark. D. Jarchi, B. Makki Abadi, and S. Sanei, Mental fatigue analysis by measuring synchronization of brain rhythms, IEEEWorkshop on Cognitive Information Processing (CIP), Jul. 2010, Elba, Italy. D. Jarchi, B. Makki Abadi, and S. Sanei, Separating and tracking ERP subcomponents using constrained particle filter, In proc. 16th Int. IEEE Conf. on Digital Signal Processing (DSP), Greece, D. Jarchi, B. Makki Abadi, and S. Sanei, Estimation of trial to trial variability of P300 subcomponents by coupled Rao-blackwellised particle filtering, IEEE Workshop on Statistical Signal Processing (SSP), 2009, Cardiff, UK. National Conference papers: B. Makki Abadi, M.H. Moradi, Classification of six-channel surface EMG signals for hand motion classes, ICEE Biomedical Section Conference, May 8-10, 2001, Tehran, IRAN (In Persian). M. Ahmadipajooh, A. shalbaf, F. Towhidkhah, M.H. Moradi, B. Makki Abadi, S. Mardian, A. Daliri, Design and implementation of a laser doppler blood flow meter, ICOP 2007, pp: , Tehran, IRAN (In Persian). M. Ostadi, A. Motamedi, and B. Makki Abadi, Designing a speech processor module for audio cochlear implant system, ICEE, 2006, Tehran, IRAN (In Persian). Reviewer IEEE Signal Processing Letters, 2010, 2013 IEEE Intelligent System Magazine, 2011 IEEE Statistical Signal processing (SSP) Conference 2009, 2011 European Signal Processing Conference (EUSIPCO) 2009, 2011 Membership Member of Institute of Electrical and Electronics Engineers (IEEE), Expertise and experiences
6 Biomedical Signal Processing Skills: EEG/ERP signal processing and localization. EMG signal processing and feature extraction. Forearm EMG classification. Blind source separation of biomedical signals. Audio spectral stimulation for audio cochlear implants. MATLAB programming skill set: Toolboxes: Simulink, Signal processing, image processing, tensor, symbolic, fuzzy system, system identification, communications, filter design, genetic algorithm. Real-time programming using S-functions. Embedded DSP Systems: Designed DSP board with Texas Ins. Davinci processors (DM6467, DM8168) for video compression in telemedicine applications. Designed DSP board with Texas Ins. C5000 processors for audio cochlear implant system. Designed DSP board with Texas Ins. C5000 processor for Laser Doppler blood flow-meter. Designed DSP board with Texas Ins. C6000 & C5000 processors for DAB exciter system. Designed FPGA board with Xilinx Sparatn FPGA for DRM front-end module. Implemented light TCP/IP on a Texas Ins. EVM board. Biomedical instrumentation: Designed DSP board for Laser Doppler blood flow-meter. Designed an Electrocardiograph (ECG) module (equipped by Intel 80C196 micro controller and digital filters). Designed a simulator and calibrator for Pulse Oximeter (SPO2) modules. Designed a standard simulator and calibrator for ECG modules. Designed a simulator and calibrator for respiratory monitoring modules. Designed hardware and software for a thermal printer driver. Signal Processing Skills: Pattern recognition and self-organized Neuro-fuzzy systems. Biomedical signal processing. Tensor signal processing. Linear algebra and matrix factorization. Tensor-based blind source separation of instantaneous mixtures. Tensor-based blind source separation of under-determined instantaneous mixtures. Tensor-based blind source separation of audio sources from their convolutive mixtures. Audio-visual blind source separation of audio sources. Image Processing Skills: Robot vision system and simple object tracker. Augmented reality for robot positioning using one camera. H.264 and H.265 video compression. Digital Communication Systems: Digital line echo canceller. DAB and DRM systems. E1 framers and softmodem signal processing.
7 V.34 Digital modem coder and decoder. Computer Programming and Embedded Software: Matlab, C, Visual C++, XILINX FOUNDATION 10.1 (FPGA programming), Modelsim6.1 (VERILOG/VHDL Programming),TMS320C6000 (6201) C and assembly, TMS320C5000 ( a) C and assembly in CODE COMPOSER STUDIO 5.1 software, Multi-thread and EXPRESS DSP compliant programming, 8051 C and assembly, 80c196 C and assembly, PROTEL99(multi-layer PCB designing)-dxp, ORCAD, Cadence Allegro 15.5, PSPICE, and others DVSDK for Davinci DSP processors (on Ubuntu linux). Productivity Applications: TEX (LATEX, BIBTEX, Beamer), Mircosoft Office, most common productivity packages. Information/Internet Technology: Networking (UDP, TCP, ARP, DNS, Dynamic routing). Embedded TCP/IP modules. International Lectures Cardiff University, Cardiff, Wales, UK Teaching Assistance Sep Jan Intelligent signal processing tutorial, Spring 2009, Fall 2009 C++ laboratory demonstration, Fall 2009, fall 2010 MATLAB laboratory demonstration, spring 2009, spring 2010 Analog and Digital Electronics laboratory demonstration, spring 2009, spring 2010 University of Surrey, Guildford, Surrey, UK Teaching Assistance Jan Oct Computer Networks laboratory demonstration, spring 2011 * References will be submitted on Request
CURRICULUM VITAE. 1. Assistant Professor, Tehran University of Medical Sciences (TUMS), Tehran, Iran
CURRICULUM VITAE Name: Bahador Makki Abadi 1) Education Year Title or activity Institution 1997 B.Sc. Shiraz University, Shiraz, IRAN 2000 M.Sc Amir Kabir University of Technology, Tehran, IRAN 2011 Ph.D.
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