Slicer3 Training Compendium
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1 Slicer3 Training Compendium Junichi Tokuda, PhD
2 This course requires the following installation: 3DSlicer version 3.6 Software (Slicer ), which can be installed from: Tracker Simulator (archived in.zip file for each platform) Disclaimer It is the responsibility of the user of 3DSlicer to comply with both the terms of the license and with the applicable laws, regulations and rules.
3 Following this tutorial, you ll be able to import tracking data from external devices (e.g. tracking system) through the network.
4 Configuring OpenIGTLink IF module Setting up Tracker Simulator Visualizing Tracking Data
5 Part 1: Configuring OpenIGTLinkIF module
6 The Graphical User Interface (GUI) of Slicer3 integrates five components: the Menu Toolbar Module GUI Panel Menu Toolbar 3DViewer the Module GUI Panel the 3D Viewer the Slice Viewer the Slice and 3D View Controller Slice and 3D View Controller Slice Viewer
7 Select IGT -> OpenIGTLinkIF
8 Connector1 or vtkmrmligtlconnectornode1 shows up on the list Click Add button
9 Status shows WAIT. 1. Check Server 2. Check Active Now 3D Slicer is waiting for a connection from the Tracking Simulator
10 Part 2: Setting up Tracker Simulator
11 In the.zip archive of Tracking Simulator contains the following command line programs: ImagerClient ImagerServer ReceiverClient StatusClient StatusServer TrackerClient (used in this Tutorial) TrackerClient2 TracerServer TrackerServer2
12 1. Unizp the downloaded file in the working directory. 2. From a terminal (or command prompt in Windows), go to the working directory and type in the following commands to start the simulator. (Please replace <directory> with the path to your actual working directory. cd <directory>/oigtl_simulators./trackerclient localhost The Tracking Simulator will connect to 3D Slicer at port and send tracking data with frame rate of 5 fps.
13 Status shows ON, if Tracker Simulator is connected successfully. NOTE: Tracker Simulator stops after sending 100 transforms to 3D Slicer. If Status becomes WAIT, repeat the steps in Part 2.
14 Part 3: Visualizing Tracking Data
15 Open Visualization / Slice Control frame Choose Tracker (TRANSFORM)
16 Locator model appears in 3D View Check Show Locator
17 Open Transforms Choose Tracker Transform is being updated while Tracker Simulator is sending data.
18 3D Slicer OpenIGTLinkIF Documentation Page Modules:OpenIGTLinkIF-Documentation-3.6 OpenIGTLink Protocol Web Page: Paper Tokuda J., et al. OpenIGTLink: an open network protocol for image-guided therapy environment. Int J Med Robot Dec;5(4): PMID: PMCID: PMC
19 National Center for Image Guided Therapy (NIH P41RR019703, P01CA067165), BRP Enabling Technologies for MRI-Guided Prostate Intervention (NIH R01CA111288) (NIH U54EB005149) Intelligent Surgical Instruments Project of METI (Japan)
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