ECG De-Noising using improved thresholding based on Wavelet transforms

Transcription

1 IJCSS International Journal of Computer Science an etwork Security, VOL.9 o.9, September 009 ECG De-oising using improve thresholing base on Wavelet transforms G. Umamaheswara Rey Prof. M. Muralihar, Dr. S. Varaaraan 3 Sri Venkateswara University College of Engineering, Sri Venkateswara University, Tirupati-57 50, A.P., Inia. Hz overlaps with the muscle noise [], while P an T waves PSD overlaps with respiration action an bloo pressure at low frequency ban (usually from 0. to Hz[]. Furthermore, the non-stationary behavior of the ECG signal, that becomes severe in the cariac anomaly case [3], incites researchers to analyze the ECG signal. Wavelet thresholing e-noising metho base on iscrete wavelet transform (DWT propose by Donoho et al. is often use in e-noising of ECG signal [4, 5]. In 999, Agante use it in e-noising of ECG signal [6]. Summary The electrocariogram (ECG is wiely use for iagnosis of heart iseases. Goo quality of ECG is utilize by physicians for interpretation an ientification of physiological an pathological phenomena. However, in real situations, ECG recorings are often corrupte by artifacts. oise severely limits the utility of the recore ECG an thus nee to be remove, for better clinical evaluation. Donoho an Johnstone [4, 5, 0] propose wavelet thresholing e-noising metho base on iscrete wavelet transform (DWT with universal threshol is suitable for non-stationary signals such as ECG signal. In the present paper a new thresholing technique is propose for enoising of ECG signal. This new e-noising metho is calle as improve thresholing e-noising metho coul be regare as a compromising between har- an soft-thresholing e-noising methos. The propose metho selects the best suitable wavelet function base on DWT at the ecomposition level of 5, using mean square error (MSE an output SR. The avantage of the improve thresholing e-noising metho is that it retains both the geometrical characteristics of the original ECG signal an variations in the amplitues of various ECG waveforms effectively. The experimental results inicate that the propose metho is better than traitional wavelet thresholing e-noising methos in the aspects of remaining geometrical characteristics of ECG signal an in improvement of signal-to-noise ratio (SR. Key wors: ECG signal, wavelet e-noising, iscrete wavelet transform, improve thresholing. Introuction Electrocariogram (ECG signal, the electrical interpretation of the cariac muscle activity, is very easy to interfere with ifferent noises while gathering an recoring. The most troublesome noise sources are the Electromyogram (EMG signal, instability of electroeskin effect, 50 / 60 Hz power line interference an the baseline wanering. Such noises are ifficult to remove using typical filtering proceures. The EMG, a high frequency component, is ue to the ranom contraction of muscles, while the abrupt transients are ue to suen movement of the boy. The base line wanering, a low frequency component is ue to the rhythmic inhalation an exhalation uring respiration. J. Pan et al. showe that the QRS complex power spectrum ensity (PSD (5-5 Wavelet thresholing e-noising methos eals with wavelet coefficients using a suitable chosen threshol value in avance. The wavelet coefficients at ifferent scales coul be obtaine by taking DWT of the noisy signal. ormally, those wavelet coefficients with smaller magnitues than the preset threshol are cause by the noise an are replace by zero, an the others with larger magnitues than the preset threshol are cause by original signal mainly an kept (har-thresholing case or shrunk (the soft-thresholing case. Then the enoise signal coul be reconstructe from the resulting wavelet coefficients. These methos are simple an easy to be use in e-noising of ECG signal. But harthresholing e-noising metho may lea to the oscillation of the reconstructe ECG signal an the softthresholing e-noising metho may reuce the amplitues of ECG waveforms, an especially reuce the amplitues of the R waves. To overcome the above sai isavantages an improve thresholing e-noising metho is propose [3, 4, 5, an 6].. Methos ECG signal is easy to be contaminate by ranom noises uncorrelate with the ECG signal, such as EMG, baseline wanering an so on, which can be approximate by a white Gaussian noise source [6, 7]. The metho can be ivie into the following steps: oise Generation an aition: A ranom noise is generate an ae to the original signal. So, the noisy ECG signal can be assume with finite length as follows: Manuscript receive September 5, 009 Manuscript revise September 0, 009

2 IJCSS International Journal of Computer Science an etwork Security, VOL.9 o.9, September 009 y (n = x (n + (n, n =,,...,. ( where x (n is the clean original MIT-BIH ECG ata signal with DC component reecte, (n is Gaussian white noise with zero mean an constant variance, y(n is the noisy ECG signal.. Decomposing of the noisy signals using wavelet transform: Using the iscrete wavelet transform by selecting mother wavelet, the noisy signal is ecompose, at the ecomposition level of 5. As a result approximate coefficients a an etail coefficients are obtaine.. Apply thresholing, to obtain the estimate wavelet coefficients. For each level a threshol value is foun, an it is applie for the etaile coefficients. (a Har-thresholing metho:, T = 0, T where preset threshol is T = σ log (3 The σ can be estimate by the wavelet coefficients with σ = ( meian ( / Here meian ( enotes the meian value of the absolute values of wavelet coefficients. 3. Reconstructing the e-noise ECG signal x( n from an a (IDWT. ( by inverse iscrete wavelet transform The same steps are to be followe for soft thresholing, an improve thresholing e-noising methos. (b Soft-thresholing metho: sgn( ( T, T = 0, T (c Improve thresholing metho: (4 ( T sgn( ( β. T, T = 0, T where β > an β R. Because the magnitues of the wavelet coefficients relate to the Gauss white noise ecreases as the scale increases, hence the threshol value will be chosen as (5 T = σ log /log( + (6 For each level, fin the threshol value that gives the minimum error between the etaile coefficients of the noisy signal an those of original signal. From equation (5, the improve wavelet thresholing enoising metho has the following characters: Assure the continuity of estimate wavelet coefficients at position ± T, so that the oscillation of the reconstructe ECG signal is avoie. Once β is fixe the eviations between an ecrease with the increase of the absolute values of, when T, if equation (5 satisfies : lim = (7 It makes the reconstructe ECG signal remain the characteristics of the original ECG signal an keep the amplitues of R waves effectively. Equation (5 will be equivalent to har-thresholing when β an will be equivalent to soft-thresholing, when β. This shows that the improve threshol enoising metho can be aapte to both har- an softthresholing e-noising methos. Therefore, the improve thresholing e-noising metho coul be regare as a compromise between the har- an soft-thresholing enoising methos. So, that the improve thresholing enosing metho presente in this paper coul choose an appropriate β by trail an-error to satisfy the request of e-noising of the ECG signal. Evaluation Criteria: We utilize both the mean square error (MSE value an SRo value between the constructe e-noise ECG signal x ( n an the original ECG signal with DC offset reecte x( n (the reference ECG signal to evaluate our metho.

3 IJCSS International Journal of Computer Science an etwork Security, VOL.9 o.9, September Determination of Mean square error: For ECG signal e-noising, the best suitable wavelet function is achieve base on the mean square error (MSE value between the e-noise ECG signal x ( n an the original with DC component reecte signal x( n. MSEwl (, = ( xi ( xi ( (8 i= where w is the wavelet function, l is the level of wavelet e-noising an is the length of the ECG segment[7]. Determination of SR Criteria: The output SR is given by x ( i SRo = 0 log ( i= i= ( xi ( xi ( SR o values to etermine the wavelet function for enoising ECG signal [7]. 3. Results an analysis To valiate the superiority of the propose improve thresholing e-noising metho, ECG signal in MIT-BIH atabase is intercepte to be the original ECG signal. The length of the original ECG signal (i.e., the number of the sample points is =04 (see Fig (a. Gauss white noise is ae to the original ECG signal, the noisy ECG signal is shown in Fig (b. oise reuction Proceures were implemente in Mat lab The effectiveness of e-noising process for 4 wavelet functions are teste [8]: Daubechies propose functions [5] (b, b3, b4, b5, b6, b7, b8, an their moifications so-calle Symlets wavelets (sym, sym3, sym4, sym5, sym6, sym7, sym8, at the ecompose scale of 5. The DWT wavelet e-noising is performe for har-thresholing, softthresholing an improve thresholing e-noising methos respectively to e-noise the noisy ECG signal. In improve thresholing e-noising metho with DWT, the coefficient β is chosen as β =. The fig. (c-(e shows that the e-noise the ECG signals by using the har-, soft- an improve-thresholing e-noising methos respectively. From fig. (c, it can see that har thresholing using DWT is better in remaining the characteristics of original ECG signal an the loss of the amplitues of R waves is not obvious. It is seen from fig.( soft-thresholing e-noising using DWT gains goo smoothness but the amplitue of R waves in reconstructe ECG signal is reuce obviously. From fig (e, the improve thresholing e-noising metho via DWT can not only remain the geometrical characteristics (9 of original ECG signal an gain goo smoothness, but also keep the amplitues of R waves in reconstructe ECG signal efficiently. The propose metho is base on choosing threshol value by fining minimum error of enoise signal an original wavelet subsignal (coefficients. Therefore, high quality enoise signal can be accomplishe. Our stuy establishes particular approach to fit ECG signal that has nonstationary clinical information. To preserve the istinct ECG waves an ifferent low pass frequency shapes, the metho threshols etaile wavelet coefficients only. This concept is use to return the low frequencies (P-wave where the frequency is less than 8Hz an T-wave where the frequency is less than Hz by inverse iscrete wavelet transform (IDWT. Donoho's metho eforms, slightly, low frequency P an T-waves, by creating small wave at the beginning of these waves. Comparative Analysis: The comparative analysis was carrie out on the ECG ata recor with SR = -0 of the reference ECG signal an β -value at in the improve thresholing enoising metho. The table. summarizes the obtaine output MSE an SR values for har-, soft-, an improve thresholing e-noising methos respectively. This will ensure the performance superiority of improve thresholing e-noising metho algorithm over har- an soft- thresholing methos. The b5 an sym8 are showing better suitable wavelets for e-noising of ECG signal. 4. Conclusion The wavelets transform allows processing of nonstationary signals such as ECG signal. The propose metho shows a new experimental threshol value for each ecomposition level of wavelet coefficients of. This threshol value is accomplishe at β = proviing better MSE an SR values comparative to har- an soft- thresholing methos. In this stuy, it shows that propose improve thresholing e-noising metho in this paper is superior to other traitional thresholing enoising methos in many aspects such as smoothness, remaining the geometrical characteristics of the original ECG signal with DC offset reecte. Though, the β value has taken at base on the maximum SR value using trial an error metho. So, it is valuable to stuy further to fin appropriate β value exactly. On other han, to evelop more appropriate an effective thresholing representation is also a valuable problem to stuy further.

4 4 IJCSS International Journal of Computer Science an etwork Security, VOL.9 o.9, September 009 Fig. De-noising of ECG signal using threshol methos with Sym8 Table : MSE an SR values for the e-noising methos using Daubechies wavelets an Symlet wavelets Wavelet b b3 b4 b5 b6 b7 b8 Daubechies wavelets Symlet wavelets Denoising Denoising MSE SRo Wavelet metho metho MSE SRo Har Har Soft sym Soft Improve Improve Har Har Soft sym3 Soft Improve Improve Har Har Soft sym4 Soft Improve Improve Har Har Soft sym5 Soft Improve Improve Har Har Soft sym6 Soft Improve Improve Har Har Soft sym7 Soft Improve Improve Har Har Soft sym8 Soft Improve Improve

5 IJCSS International Journal of Computer Science an etwork Security, VOL.9 o.9, September References [] Pan. J an W.J. Tompkins, A real-time QRS etection algorithm, IEEE Trans. Bio-Me. Eng., 3:75-77, 985. [] P.V.E. Mc Clintock, an A. Stefanovska, oise an eterministic in cariovascular ynamics, Physica A., 34: 69-76, 00. [3] M. Sivannarayana, an D.C. Rey, Biorthogonal wavelet transform for ECG parameters estimation, Me. Eng. an Physics, ELSEVIER, :67-74, 999. [4] D.L. Donoho an I.M. Johnstone, Ieal spatial aaptation via wavelet shrinkage, Biometrika, 994, Vol.8, pp [5] D.L. Donoho, De-noising by soft thresholing, IEEE Trans. Trans. Inform. Theory, vol. 4, pp , 995. [6] P.M. Agante an J.P. Marques e sa, ECG noise filtering using wavelets with soft-thresholing methos, Computers in Cariology, vol. 6, pp , 999. [7] F.. Ucar, M. Korurek, an E. Yazgan, A noise reuction algorithm in ECG signals using wavelet transforms, Biomeical Engineering Days, Proceeings of the 998 n International Conference, pp.36-38,998. [8] ftp://ftp.ieee.org/uploas/press/rangayyan/ [9] S. Mallat, A theory for multiresolution signal ecomposition: the wavelet representation, IEEE Pattern Anal. an Machine Intel., vol., no. 7, pp , 989. [0] D.L. Donoho, an I.M. Johnstone, Aapting to unknown smoothness via wavelet shrinkage, J. ASA, vol. 90, pp. 00 3, 995. [] G. Song an R. Zhao, Three novel moels of threshol estimator for wavelets coefficients, n International Conference on Wavelet Analysis an Its Applications, Berlin: Springer-verlag, pp.45-50, 00. [] W. Gao, H. Li, Z. Zhuang, an T. Wang, De-noising of ECG signal base on stationary wavelet transform, Acta Electronica Sinica, vol.3, pp.38-40, 003. [3] R.R. Coifman an D.L. Donoho. Translation-invariant enoising, in Wavelets an Statistics, Springer Lecture otes in Statistics 03, ewyork: Springer-Verlag, pp.5-50, 994. [4] T.D. Bui an G. Chen, Translation-invariant e-noising using multi-wavelets, IEEE Trans. Signal Processing, vol.46, pp , 998. [5] S.A. Chouakri, an F. Bereksi-Reguig, Wavelet enoising of the electrocariogram signal base on the corrupte noise estimation, Computers in Cariology, Vol.3, pp.0-04, 005. [6] S.A. Chouakri, F. Bereksi-Reguig, S. Ahmaii, an O.Fokapu, ECG signal smoothing base on combining wavelet enoising levels, Asian Journal of Information Technology, Vol. 5(6, pp , 006. [7] Mikhle Alfaouri an Khale Daqrouq, ECG signal enoising by wavelet transform thresholing, American ournal of Applie Sciences, vol. 5(3, pp.76-8, 008. [8] M.Kania, M.Fereniec, an R. Maniewski, Wavelet enoising for multi-lea high resolution ECG signals, Measurement Science review, vol.7.pp , 007. G. Umamaheswara Rey receive B.Tech egree in Electronics an Communication Engineering an M.Tech egree in Instrumentation & Control Systems from Sri Venkateswara University, Tirupati in 99 an 995, respectively. At present, he is working as Associate Professor, Department of Electrical an Electronics Engineering, Sri Venkateswara University, Tirupati, Anhra Praesh, Inia. Prof. M. Muralihar receive B.Tech egree in Electrical an Electronics Engineering, M.Tech egree in Instrumentation & Control Systems, an Ph.D. from Sri Venkateswara University, Tirupati in 979, 98, an 987 respectively. He worke as Senior Associate Professor in AIMST University, Malaysia for a perio of two years. Currently, he is working as Professor, Department of Electrical an Electronics Engineering, & Vice-Principal, College of Engineering, Sri Venkateswara University, Tirupati, Anhra Praesh, Inia. Dr. S. Varaaraan receive B.Tech egree in Electronics an Communication Engineering Sri Venkateswara University, Tirupati in 987 an M.Tech egree from IT, Warangal in Instrumentation from in 979 an 98, respectively. He obtaine Ph.D. from Sri Venkateswara University, Tirupati in 997. He is a fellow of IETE an member, IEEE. Currently, he is working as Associate Professor in the Department of Electrical an Electronics Engineering, Sri Venkateswara University, Tirupati, Anhra Praesh, Inia.