What is Galaxy? And why should I learn it? Keith Bradnam
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1 What is Galaxy? And why should I learn it? Keith Bradnam
2 13 questions you may have about Galaxy
3 1
4 How does Galaxy describe Galaxy? Galaxy is an open, web-based platform for data intensive biomedical research
5 How does Galaxy describe Galaxy? Galaxy is an open, web-based platform for data intensive biomedical research
6 How does Galaxy describe Galaxy? Galaxy is an open, web-based platform for data intensive biomedical research
7 How does Galaxy describe Galaxy? Galaxy is an open, web-based platform for data intensive biomedical research
8 Microsoft Excel is not always the right tool for the job Microsoft: By importing FASTA data into Excel, researchers are better able to visualize and analyze information.
9 Microsoft Excel is not always the right tool for the job X Microsoft: By importing FASTA data into Excel, researchers are better able to visualize and analyze information.
10 2
11 What is Galaxy? A web-based platform that provides a simplified interface to many popular bioinformatics tools. Can generate reproducible workflows Can also be used as a data hub
12 What is Galaxy? A web-based platform that provides a simplified interface to many popular bioinformatics tools. Can generate reproducible workflows Can also be used as a data hub
13 What is Galaxy? A web-based platform that provides a simplified interface to many popular bioinformatics tools. Can generate reproducible workflows Can also be used as a data hub
14 3
15 Who makes Galaxy? Center for Comparative Genomics and Bioinformatics Department of Biology
16 Who makes Galaxy? Plus countless contributions from the Galaxy community
17 Who makes Galaxy?
18 4
19 How long has Galaxy been around? Over a decade!
20 How long has Galaxy been around? 1st publication describing Galaxy: Sep 16th, 2005
21 How long has Galaxy been around?
22 How long has Galaxy been around?
23 5
24 Will Galaxy be around in 5 years? A good question to ask! Should be safe to use for analysis of your next paper or two but can always be useful to stay alert for alternatives that might emerge
25 Will Galaxy be around in 5 years?
26 6
27 How is Galaxy different from Unix? Unix is vastly more powerful but comes with a steeper learning curve For many bioinformatics tools, Galaxy is simply wrapping those tools in some friendly, child-proof packaging
28 7
29 How much does Galaxy cost? $0.00 Assuming you have access to a web browser and Internet connectivity, or can install on your own computer
30 8
31 Should I learn to use Unix instead? If you can, yes. Unix has been around for almost 50 years, not going to disappear any time soon. You will be able to do many more powerful things if you learn to use Unix, but
32 Should I learn to use Unix instead? consider Galaxy as your gateway drug to learning Unix
33 Should I learn to use Unix instead? Galaxy will teach you about command-line options of bioinformatics tools Galaxy will show you some simple ways of processing text files Galaxy will teach you the idea of building reproducible workflows
34 9
35 Can Galaxy be customized? Yes. Many customizations can be made Some Unix expertise needed Common customizations add specific bioinformatics tools and/or prepopulate Galaxy with specific datasets
36 Can Galaxy be customized? The existence of so many different public Galaxy servers is a reflection of the demand for custom Galaxy installations
37 Can Galaxy be customized?
38 Can Galaxy be customized?
39 Can Galaxy be customized?
40 10
41 Why should I learn Galaxy? To perform powerful bioinformatics analyses To perform reproducible bioinformatics analyses To dip your toes into the world of computing Because Microsoft Excel is not the answer
42 11
43 How do I find out more? Try the main Galaxy server: Galaxy wiki: Biostar forum Mailing lists
44 How do I find out more?
45 How do I find out more?
46 How do I find out more?
47 12
48 When shouldn t I use Galaxy? People like cakes Some people like to bake cakes Others buy their cakes from the store
49 When shouldn t I use Galaxy? Paying a bioinformatics core facility to do your analysis may be a better use of your money (and time)
50 13
51 Anything else I should know? Galaxy will not do your work for you Galaxy will not write papers for you! Remember the bioinformatics maxim: Garbage in Garbage out
52 The end
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