Determining Relatedness from a Pedigree Diagram

Similar documents
Developing Conclusions About Different Modes of Inheritance

Using Pedigrees to interpret Mode of Inheritance

Pedigrees How do scientists trace hereditary diseases through a family history?

1) Using the sightings data, determine who moved from one area to another and fill this data in on the data sheet.

Decrease of Heterozygosity Under Inbreeding

BIOL Evolution. Lecture 8

have to get on the phone or family members for the names of more distant relatives.

Chapter 2: Genes in Pedigrees

NON-RANDOM MATING AND INBREEDING

Princess Margaret Cancer Centre Familial Breast and Ovarian Cancer Clinic. Family History Questionnaire

Lecture 1: Introduction to pedigree analysis

The Pedigree. NOTE: there are no definite conclusions that can be made from a pedigree. However, there are more likely and less likely explanations

FAMILY HISTORY QUESTIONNAIRE

Methods of Parentage Analysis in Natural Populations

Population Genetics 3: Inbreeding

Primer on Human Pedigree Analysis:

Please complete the information in this packet and return it PRIOR to your appointment with the Familial Cancer Risk Assessment Center.

Your mtdna Full Sequence Results

DNA Basics, Y DNA Marker Tables, Ancestral Trees and Mutation Graphs: Definitions, Concepts, Understanding

4. Kinship Paper Challenge

DNA Testing What you need to know first

Need a little help with the lab?

Exercise 8. Procedure. Observation

APPLICATION FOR ENROLLMENT

HEREDITARY CANCER FAMILY HISTORY QUESTIONNAIRE

Kinship and Population Subdivision

and g2. The second genotype, however, has a doubled opportunity of transmitting the gene X to any

ICMP DNA REPORTS GUIDE

AFDAA 2012 WINTER MEETING Population Statistics Refresher Course - Lecture 3: Statistics of Kinship Analysis

Chromosome X haplotyping in deficiency paternity testing principles and case report

Eastern Regional High School. 1 2 Aa Aa Aa Aa

Using Meiosis to make a Mini-Manc

Pedigree Charts. The family tree of genetics

Pedigree Reconstruction using Identity by Descent

Halley Family. Mystery? Mystery? Can you solve a. Can you help solve a

Conservation Genetics Inbreeding, Fluctuating Asymmetry, and Captive Breeding Exercise

DNA Parentage Test No Summary Report

Using X-DNA for Genealogy Debbie Parker Wayne, CG, CGL SM

Populations. Arindam RoyChoudhury. Department of Biostatistics, Columbia University, New York NY 10032, U.S.A.,

Section SN [SOCIAL NETWORK] Sequence: 8

Puzzling Pedigrees. Essential Question: How can pedigrees be used to study the inheritance of human traits?

Getting the Most Out of Your DNA Matches

Two-point linkage analysis using the LINKAGE/FASTLINK programs

Detection of Misspecified Relationships in Inbred and Outbred Pedigrees

Spring 2013 Assignment Set #3 Pedigree Analysis. Set 3 Problems sorted by analytical and/or content type

Genetics. 7 th Grade Mrs. Boguslaw

Lecture 6: Inbreeding. September 10, 2012

Investigations from last time. Inbreeding and neutral evolution Genes, alleles and heterozygosity

PopGen3: Inbreeding in a finite population

Name: Date of Birth: First Middle Last (Prior Names)

CIVILIAN PERSONAL HISTORY FORM

Introduction to genealogy with EuGENEus!

DNA: Statistical Guidelines

Visual Phasing of Chromosome 1

Spring 2016 Math 54 Test #2 Name: Write your work neatly. You may use TI calculator and formula sheet. Total points: 103

Statistical methods in genetic relatedness and pedigree analysis

Characterization of the global Brown Swiss cattle population structure

The X-linked Blood Group System Xg

Pedigree- The Genetic Family Tree

Free Online Training

University of Washington, TOPMed DCC July 2018

Optimum contribution selection conserves genetic diversity better than random selection in small populations with overlapping generations

Section SN [SOCIAL NETWORK] Sequence: 8

DNA Parentage Test No Summary Report

Genealogical Research

DAR POLICY STATEMENT AND BACKGROUND Using DNA Evidence for DAR Applications

BIOL 502 Population Genetics Spring 2017

1.4.1(Question should be rather: Another sibling of these two brothers) 25% % % (population risk of heterozygot*2/3*1/4)

Class Examples (Ch. 3)

DNA The New Genealogy Frontier Hope N. Tillman & Walt Howe Charlestown October 14, 2016

Arba Pedigree Download or Read Online ebook arba pedigree in PDF Format From The Best User Guide Database

How to Combine Records in (New) FamilySearch

DNA Parentage Test No Summary Report

Inbreeding depression in corn. Inbreeding. Inbreeding depression in humans. Genotype frequencies without random mating. Example.

The Snohomish Tribe of Indians Application for Enrollment

Mehdi Sargolzaei L Alliance Boviteq, St-Hyacinthe, QC, Canada and CGIL, University of Guelph, Guelph, ON, Canada. Summary

DNA Testing. February 16, 2018

Background. 6JSC/ALA/25 August 2, 2013 page 1 of 29

An Introduction. Your DNA. and Your Family Tree. (Mitochondrial DNA) Presentation by: 4/8/17 Page 1 of 10

Pedigree Of Deafness Download or Read Online ebook pedigree of deafness in PDF Format From The Best User Guide Database

What Can I Learn From DNA Testing?

Non-Paternity: Implications and Resolution

Pedigree Worksheet Name Period Date Interpreting a Human Pedigree Use the pedigree below to answer 1-5

Popstats Parentage Statistics Strength of Genetic Evidence In Parentage Testing

1/8/2013. Free Online Training. Using DNA and CODIS to Resolve Missing and Unidentified Person Cases. Click Online Training

Kin investment of aunts and uncles: Why is the matrilateral bias stronger in women?

Finding a Male Hodge(s) Descendant for Y-Chromosome DNA Testing. Prepared by Jan Alpert

COMBINATORIAL RECONSTRUCTION OF HALF-SIBLING GROUPS

Stirps Romana. Patruus Amita Abavus---Abavia Avunculus Matertera Maximus Maxima Maximus Maxima (3) (3) (3)

Introduction to Michael Woods (Sr. and Jr.) Age Books and One Correction. by Cecilia L. Fabos-Becker, 2 August, 2014

Large scale kinship:familial Searching and DVI. Seoul, ISFG workshop

Genetic variability of Lizard canary breed inferred from pedigree analysis

Revising how the computer program

STUDENT LABORATORY PACKET

Some of these slides have been borrowed from Dr. Paul Lewis, Dr. Joe Felsenstein. Thanks!

THE CANADIAN HERALDIC AUTHORITY

Materials and Methods

VIP Personal Information

Thesis/Dissertation Collections. Panneerselvam, Madhumalar, "Pedigree tool" (2007). Thesis. Rochester Institute of Technology.

All applications must be submitted online or received via post by 5pm on 30 September, 2015.

Transcription:

Kin structure & relatedness Francis L. W. Ratnieks Aims & Objectives Aims 1. To show how to determine regression relatedness among individuals using a pedigree diagram. Social Insects: C1139 2. To show how to determine relatedness among offspring females in colonies headed by a queen mated to more than one male, or by several queens. Laboratory of Apiculture & Social Insects Department of Biological & Environmental Science University of Sussex Objectives 1. To learn the methodology covered in lecture. Determining Relatedness from a Pedigree Diagram Pedigree Diagram for Determining Relatedness You must learn certain degrees of relatedness by heart. For example, the regression relatedness between full sisters is and between half sisters is. Mother to daughter is. Mother to is 1. But it is not possible to learn all possible relatednesses. For example, to your great-grandmother s aunt. Fortunately, these can be calculated from the pedigree diagram following. The method is based on the four degrees of regression relatedness below, from which all others can be calculated. Donor Recipient Reg. Relatedness Male Female (daughter, mother) Male Male (, father) 0 (has no father) Female Female (daughter, mother) Female Male (, father) 1

Pedigree Diagram for Determining Relatedness d) worker b) queen s mate 1 a) mother queen c) queen s mate 2 1 1 1 1 e) h) i) f) worker queen s queen s worker Parents Queen s offspring g) worker Pedigree Diagram for Determining Relatedness Relatedness can be calculated from the diagram in the previous slide. (We will only consider cases where outbreeding occurs.) The method is based on the four degrees of regression relatedness given before this. Each arrow goes from donor to recipient. When the arrow connects a male with a female the numbers at the two ends are different, so be careful you know which "way" you are going. relatedness between full sisters (e.g., d to e) (d to a, ) x (a to e, ) + (d to b, 1) x (b to e, ) = these two individuals are connected via both mother and father j) 1 1 1 1 k) l) m) Workers s relatedness between half sisters (e.g., d to f) (d to a, ) x (a to f, ) = these two individuals are connected only via the mother relatedness of a worker to a full-sister worker's (e.g., d to k) (d to a, ) x (a to e, ) x (e to k, 1) + (d to b, 1) x (b to e, ) x (e to k, 1) = Pedigree Diagram: Cousin Relatedness Two full sister queens, each mated to a different unrelated male x cousin relatedness x x = x Relatedness Among Female Offspring When Queen is Mated to Multiple Males, or there are Multiple Queens Heading the Colony

Multiple Paternity/Mating If the queen mates with more than one male, how does this affect relatedness among female offspring? Full sisters are related by and half sisters by. But what is the average relatedness among all female offspring? In many species, the female offspring of a single queen are fathered by more than one male: there is more than one patriline in the colony. When multiple paternity occurs, paternity is usually not equal. For example, the female offspring may have two fathers, one fathering 80% and the other 20%. Double Paternity Full sisters are related by and half sisters by. If there are two fathers, what is the average relatedness among all female offspring? The average of and? Yes. But only if the two males have equal paternity. If their paternity is unequal, relatedness is higher. To understand things work through the next slides. 2 Fathers, Equal Paternity Prop.= cell Rel = = (+) + (+) = 2 Fathers, Equal Paternity The previous diagram enables us to calculate the relatedness among female offspring. It works in exactly the same way as the Punnet square used to calculate diploid genotype frequencies from gene frequencies. We assume that offspring interact at random. The four cells represent the four types of interaction possible. with (a), 1 with 2 (c), 2 with 1 (b), 2 with 2 (d) These have probabilities that depend on the proportion of offspring in each patriline. In this case each probability = x =. Each interaction has an associated relatedness. for interactions between two full sisters (blue), and for half sisters (white). From these we can determine the average level of relatedness. ( + ) + ( + ) = RelFullSisters(Prob 1 with 1 + Prob 2 with 2) + RelHalfSisters(Prob 1 with 2 + Prob 2 with 1)

2 Fathers, Unequal Paternity With unequal paternity, the probabilities of full sister interactions increase. The effect on relatedness is quite small when the paternities are &. = (0.09+0.49) + (0.21+0.21) = 4 0.1 2 Fathers, Very Unequal Paternity 0.1 0.9 0.9 With very unequal paternity, the probabilities of full sister interactions increase almost to 100%. The situation approaches that of single paternity. = (0.01+0.81) + (0.09+0.09) = 0.68 Patriline 3 0.2 Many Fathers, Unequal Paternity Patriline 3 0.2 The same general idea can be extended to any number of fathers with any paternity shares. =(0.09++0.04) + (0.15+0.06+0.15+0.1+0.06+0.1) = 0.44 Effective Paternity The previous slides show that when a queen is mated to two males, relatedness among female offspring depends on their paternity shares. As these become more unequal the situation approaches that of single mating. For example, with paternities of 0.9 and 0.1 relatedness among is 0.68, quite close to the for single paternity. Even though there may be two fathers in a sense the effective paternity is less than two. We can determine effective paternity from the equation below, where n is effective paternity and b is relatedness. b = + /n rearrange to give n = /(b - ) From this equation we get effective paternities as follows Paternities Relatedness Actual Paternity Effective Pat., 2 2.00, 4 2 1.72 0.9, 0.1 0.68 2 1.16,, 0.2 0.44 3 2.63

2 Full-Sister Mothers, Each Single Paternity = (0.09+0.49) + (0.21+0.21) = 1 Cousin interaction The same method can be extended to multiple queens. Here we have a colony headed by two full-sister queens each mated to a different male. From the pedigree diagram we know that relatedness between cousin females is. 2 Unrelated Mothers, Each Single Paternity 0 = (0.09+0.49) + 0(0.21+0.21) = 0.435 0 Non-kin interaction Here the relatedness between offspring of different mothers is zero. 2 Full-Sister Mothers, One Single & One Double Paternity Pat 1 Pat 2 33 0.667 Cousin interaction Here we have a more complex situation. Two full sister queens, one mated to a single male and one to two males, with paternities of 33 and 0.667. = (0.09 + (()(33)) 2 +(()(0.667)) 2 ) + ( x 33 x 0.667 x 2) + ( x x 2) = 0.405 Self Test The only way to be sure that you understand this is to work through some examples. First work through the examples in the slideshow. Then work out some more, such as these. 1. Determine relatedness among offspring females when a. Single queen mated to 2 unrelated males, paternities 0.2, 0.8 b. Single queen mated to 10 unrelated males, equal paternity c. Single queen mated to 20 unrelated males, equal paternity d. Two queens, mother and daughter, each single paternity e. 5 queens, all are unrelated, each single paternity 2. Using a pedigree diagram determine a. Regression relatedness of mother queen to daughter s b. Regression relatedness of two males, the queen s mate and the of one of his daughter workers.