P u b l i c a t i o n s

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1 P u b l i c a t i o n s Journals S. Bouix, K. Siddiqi and A. Tannenbaum. Flux Driven Automatic Centerline Extraction. Medical Image Analysis, to appear, S. Bouix and K. Siddiqi. Hamilton-Jacobi Skeletons: Theory and Applications. Advances in Imaging and Electron Physics, to appear, M. Audette, K. Siddiqi, F. P. Ferrie and T. M. Peters. An Integrated Range- Sensing, Segmentation and Registration Framework for the Characterization of Intra-surgical Brain Deformations in Image-guided Surgery. Computer Vision and Image Understanding, 89(2-3), S. M. Pizer, K. Siddiqi, G. Székely, J. N. Damon and S. W. Zucker. Multiscale Medial Loci and Their Properties. International Journal of Computer Vision, 55(3), A. Vasilevskiy and K. Siddiqi. Flux Maximizing Geometric Flows. IEEE Transactions on Pattern Analysis and Machine Intelligence, 24(12), K. Siddiqi, S. Bouix, A. Tannenbaum and S. W. Zucker. Hamilton-Jacobi Skeletons. International Journal of Computer Vision, 48(3), K. Siddiqi, B. B. Kimia, A. R. Tannenbaum and S. W. Zucker. On the Psychophysics of the Shape Triangle. Vision Research, 41(9), J. August, K. Siddiqi and S. W. Zucker. Ligature Instabilities in the Perceptual Organization of Shape. Computer Vision and Image Understanding, 76(3), J. August, K. Siddiqi and S. W. Zucker. Contour Fragment Grouping Behind Objects. Computer Vision and Image Understanding, 76(2), M. Pelillo, K. Siddiqi and S. W. Zucker. Matching Hierarchical Structures Using Association Graphs. IEEE Transactions on Pattern Analysis and Machine Intelligence, 21(11), K. Siddiqi, A. Shokoufandeh, S. J. Dickinson and S. W. Zucker. Shock Graphs and Shape Matching. International Journal of Computer Vision, 3(1), K. Siddiqi, B. B. Kimia, A. R. Tannenbaum and S. W. Zucker. Shapes, Shocks and Wiggles. Image and Vision Computing, 17, K. Siddiqi, Y. Berube, A. Tannenbaum, and S. W. Zucker. Area and Length Minimizing Flows for Shape Segmentation. IEEE Transactions on Image Processing (special issue on pdes in image analysis), 7(3), K. Siddiqi, B. B. Kimia and C. W. Shu. Geometric Shock-Capturing ENO Schemes for Subpixel Interpolation, Computation, and Curve Evolution. Graphical Models and Image Processing, 59(5), B. B. Kimia and K. Siddiqi. Geometric Heat Equation and Nonlinear Diffusion of Shapes and Images. Computer Vision and Image Understanding, 64(3), K. Siddiqi, K. J. Tresness, and B. B. Kimia. Parts of Visual Form: Psychophysical Aspects. Perception, 25(4), April R. Kimmel, K. Siddiqi, B. B. Kimia, and A. Bruckstein. Shape from shading: Level Set Propagation and Viscosity Solutions. International Journal of Computer Vision, 16(2), K. Siddiqi and B. B. Kimia. Parts of Visual Form: Computational Aspects. IEEE Transactions on Pattern Analysis and Machine Intelligence, 17(3), March

2 Conferences I Reinertsen, M. Descoteaux, S. Drouin, K. Siddiqi and L. Collins. Vessel Driven Correction of Brain Shift. In MICCAI 2004 (International Conference On Medical Image Computing and Computer Assisted Intervention (St. Malo, France), September, M. Descoteaux, L. Collins and K. Siddiqi. Geometric Flows for Segmenting Vasculature in MRI: Theory and Quantitative Validation. In MICCAI 2004 (International Conference On Medical Image Computing and Computer Assisted Intervention (St. Malo, France), September, M. Descoteaux, L. Collins and K. Siddiqi. A Multi-Scale Geometric Flow for Segmenting Vasculature in MRI. In Computer Vision Approaches to Medical Image Analysis and Mathematical Methods in Biomedical Image Analysis Workshop (ECCV, Prague, Czech Republic), May, J. S. W. Campbell, K. Siddiqi and G. Bruce Pike. Full-brain Q-Ball Imaging in a Clinically Acceptable Time: Application to White Matter Fibre Tractography. In International Society for Magnetic Resonance in Medicine Conference (Kyoto, Japan), May, J. S. W. Campbell, K. Siddiqi, V. Rymar, A. F. Sadikot and G. Bruce Pike. Comparison of flow and streamline-based fibre tracking algorithms using an anisotropic diffusion phantom. In International Society for Magnetic Resonance in Medicine Conference (Kyoto, Japan), May, P. Savadjiev, F. Ferrie and K. Siddiqi. Surface Recovery from 3D Point Data Using a Combined Parametric and Geometric Flow Approach. In International Workshop On Energy Minimization Methods in Computer Vision and Pattern Recognition (Lisbon, Portugal), July, P. Dimitrov, J. N. Damon and K. Siddiqi. Flux Invariants for Shape. In International Conference On Computer Vision and Pattern Recognition (Madison, Wisconsin), June, S. Bouix, K. Siddiqi and A. Tannenbaum. Flux Driven Fly Throughs. In International Conference On Computer Vision and Pattern Recognition (Madison, Wisconsin), June, A. Ghuneim, K. Siddiqi and L. Cortelezzi. A Level-Set Vortex Hybrid Method For Simulating the Reconnection of Vortex Filaments. In Division of Fluid Dynamics Meeting, American Physical Society (Dallas, Texas), November, L. Zhu, S. Bouix, S. Haker, K. Siddiqi and A. Tannenbaum. Extended Summary of Conformal Flattening Maps for the Visualization of Multi-branched Vessels. In International Conference On Image Processing (Rochester, New York), September, D. Macrini, A. Shokoufandeh, S. J. Dickinson, K. Siddiqi and S. W. Zucker. Spectral Methods for View-Based 3D Recognition Using Silhouettes. In International Workshop on Syntactical and Structural Pattern Recognition (Quebec City, Quebec, Canada), August, D. Macrini, A. Shokoufandeh, S. J. Dickinson, K. Siddiqi and S. W. Zucker. View-Based 3D Object Recognition Using Shock Graphs. In International Conference On Pattern Recognition (Quebec City, Quebec, Canada), August, J. S. W. Campbell, K. Siddiqi, Baba C. Vemuri and G. B. Pike. A Geometric Flow for White Matter Fibre Tract Reconstruction. In International Symposium On Biomedical Imaging (Washington, DC), July,

3 J. S. W. Campbell, K. Siddiqi and G. B. Pike. White Matter Fibre Tract Likelihood Evaluated using Normalized RMS Diffusion Distance. In International Society for Magnetic Resonance in Medicine Conference (Honolulu, Hawai), May, S. Bouix, J. Pruessner, D. L. Collins and K. Siddiqi. Hippocampal Shape Analysis Using Medial Surfaces. In MICCAI 2001 (International Conference On Medical Image Computing and Computer Assisted Intervention (Utrecht, The Netherlands), September, K. Siddiqi and A. Vasilevskiy. 3D Flux Maximizing Flows. In EMMCVPR 2001 (International Workshop on Energy Minimizing Methods In Computer Vision (Sophia Antipolis, France, September, 2001). A. Vasilevskiy and K. Siddiqi. Flux Maximizing Geometric Flows. In ICCV 2000 (International Conference on Computer Vision, Vancouver, Canada, July, 2001). M. Pelillo, K. Siddiqi and S. W. Zucker. Many-to-many Matching of Attributed Trees Using Association Graphs and Game Dynamics. In IWVF 2001 (International Workshop on Visual Form, Capri, Italy, May, 2001). M. Bartolli, M. Pelillo, K. Siddiqi and S. W. Zucker. Attributed Tree Homomorphism Using Association Graphs. In ICPR 2000 (International Conference on Pattern Recognition, Barcelona, Spain, September, 2000). S. Bouix and K. Siddiqi. Divergence-Based Medial Surfaces. In ECCV 2000 (European Conference on Computer Vision, Dublin, Ireland, June, 2000). P. Dimitrov, C. Phillips and K. Siddiqi. Robust and Efficient Skeletal Graphs. In CVPR 2000 (Conference on Computer Vision and Pattern Recognition (Hilton Head, South Carolina), June, 2000). S. Bouix, P. Dimitrov, C. Phillips and K. Siddiqi. Physics-Based Skeletons. In Vision Interface (Montreal, Canada), May, K. Siddiqi, S. Bouix, A. Tannenbaum and S. W. Zucker. The Hamilton- Jacobi Skeleton. In ICCV 99 (International Conference on Computer Vision (Corfu, Greece), September, 1999). M. Audette, K. Siddiqi and T. Peters. Level-Set Surface Segmentation and Fast Cortical Range Image Tracking for Computing Intrasurgical Deformations. In MICCAI 99 (International Conference on Medical Image Computing and Computer-Assisted Intervention (Cambridge, UK), September, 1999). M. Pelillo, K. Siddiqi and S. W. Zucker. Attributed Tree Matching and Maximum Weight Cliques. In ICIP 99 (International Conference on Image Analysis and Processing (Venice, Italy), September, 1999). K. Siddiqi, A. Tannenbaum and S. W. Zucker. A Hamiltonian Approach to the Eikonal Equation. In EMMCVPR 99 (Workshop on Energy Minimization Methods in Computer Vision and Pattern Recognition (York, UK), July, 1999). J. August, K. Siddiqi and S. W. Zucker. Ligature Instabilities in the Perceptual Organizations of Shape. In CVPR 99 (Conference on Computer Vision and Pattern Recognition (Fort Collins, Colorado), June, 1999). A. Shokoufandeh, S. J. Dickinson, K. Siddiqi and S. W. Zucker. Indexing using a Spectral Encoding of Topological Structure. In CVPR 99 (Conference on Computer Vision and Pattern Recognition (Fort Collins, Colorado), June, 1999). 8

4 S. W. Zucker, K. Siddiqi, B. B. Kimia and A. Tannenbaum. Categorical Features in Shape Perception. In ARVO 99 (Association for Research in Vision and Opthalmology Conference (Fort Lauderdale, Florida), May, 1999). K. Siddiqi, B. B. Kimia, A. R. Tannenbaum and S. W. Zucker. On the Psychophysics of the Shape Triangle. In Eastern Psychological Association Conference on Vision and Attention, Providence, RI, April, M. Pelillo, K. Siddiqi and S. W. Zucker. Continuous-based Heuristics for Graph and Tree isomorphism, With Application to Computer Vision. In Conference on Approximation and Complexity in Numerical Optimization: Continuous and Discrete Problems (University of Florida), February, J. August, K. Siddiqi and S. W. Zucker. Duality in Perceptual Organization: Grouping versus Shape Decomposition. In Workshop on Perceptual Organization in Computer Vision (Conference on Computer Vision, Santa Barbara, CA, June 23 26, 1998). M. Pelillo, K. Siddiqi and S. W. Zucker. Matching Hierarchical Structures Using Association Graphs. In ECCV 98 (European Conference on Computer Vision, Freiburg, Germany, June 2 6, 1998). K. Siddiqi, A. Shokoufandeh, S. J. Dickinson and S. W. Zucker. Shock Graphs and Shape Matching. In ICCV 98 (International Conference on Computer Vision, Bombay, India, January 4 8, 1998). K. Siddiqi, A. R. Tannenbaum and S. W. Zucker. Hyperbolic Smoothing of Shapes. In ICCV 98 (International Conference on Computer Vision, Bombay, India, January 4 8, 1998). K. Siddiqi, A. R. Tannenbaum, and S. W. Zucker. Area Minimizing Flows. In ICIP 97 (IEEE Signal Processing Society International Conference on Image Processing, Santa Barbara, California, October 26 30, 1997). K. Siddiqi, Y. Berube, A. R. Tannenbaum, and S. W. Zucker. Area and Length Minimizing Flows for Shape Segmentation. In CVPR 97 (IEEE Computer Society Conference on Computer Vision and Pattern Recognition, San Juan, Puerto Rico, June 17 19, 1997). K. Siddiqi, B. B. Kimia, A. R. Tannenbaum, and S. W. Zucker. Shape, Shocks and Wiggles. In Proceedings of the Third International Workshop on Visual Form, Capri, Italy, May, J. August, K. Siddiqi and S. W. Zucker. Fragment Grouping via the Principle of Perceptual Occlusion. In ICPR 96 (International Conference on Pattern Recognition, Vienna, Austria, August 25 30, 1996). K. Siddiqi and B. B. Kimia. A Shock Grammar for Recognition. In CVPR 96 (IEEE Computer Society Conference on Computer Vision and Pattern Recognition, San Francisco, California, June 18 20, 1996). K. Siddiqi, B. B. Kimia and C. W. Shu. Geometric Shock-Capturing ENO Schemes for Subpixel Interpolation, Computation, and Curve Evolution. In ISCV 95 (IEEE International Symposium on Computer Vision, Coral Gables, Florida, November 19 21, 1995). K. Siddiqi, J. Subrahmonia, D. B. Cooper and B. B. Kimia. Part-Based Bayesian Recognition Using Implicit Polynomial Invariants. In ICIP 95 (IEEE Signal Processing Society International Conference on Image Processing, Washington, DC, October 23 26, 1995). B. B. Kimia and K. Siddiqi. Geometric Heat Equation and Nonlinear Diffusion of Shapes and Images. In CVPR 94 (IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Seattle, Washington, June 20 23, 1994). 9

5 K. Siddiqi, K. J. Tresness, and B. B. Kimia. On the Anatomy of Visual Form. In Proceedings of the Second International Workshop on Visual Form, Capri, Italy, May World Scientific. K. Siddiqi and B. B. Kimia. Parts of visual form: Computational Aspects. In CVPR 93 (IEEE Computer Society Conference on Computer Vision and Pattern Recognition, New York, New York, June 15 17, 1993). Nominated for Best Student Paper Award. 10