CESGO. O.Collin / C. Monjeaud

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1 CESGO O.Collin / C. Monjeaud

2 Context the convergence of digital technologies for the production, dissemination and analysis of data and novel regulatory and institutional regimes is provoking a reshuffling of priorities in research practices and outcomes Sabina Leonelli Data-Centric Biology: A Philosophical Study, Chicago, IL, Chicago University Press, 2016

3 Context : data-centrism & Open Science Modern computers permit massive datasets to be assembled and explored in ways that reveal inherent but unsuspected relationships. The emergence of linked data technologies creates new information through deeper integration across different datasets with the potential to greatly enhance automated approaches to data analysis. Communication technologies have the potential to create novel social dynamics in science.

4 Big Data for Advancing Dementia Research Ulrike Deetjen Eric T. Meyer Ralph Schroeder Oxford Internet Institute, University of Oxford March 2015

5 Ideas Publication Partners Idea : To provide an integrated environment to help scientists to work from project ideas to publication through data production and management Research process Production Proposal writing Research lifecycle Data lifecycle Publication Preservation Analysis Processing

6 Data Collaborative phase Text documents Contacts Mails Etc. Research phase Séquences Images Spectrums Etc.

7 Project Lifecycle Ideas Production Data Lifecycle Publication Partners Publication Processing Research process Proposal writing Preservation Analysis Collaboration Data*

8 Que peut-on faire avec l environnement CeSGO? Create groups Share ideas Exchange Edit and share documents Deploy website Manage and share files Manage scientific research data Launch computes Manage projects

9 A one stop shop

10 SEEK SEEK is being developed and funded as part of the FAIRDOM initiative Developed by University of Manchester FAIR : Findable Accessible Interoperable Reusable A set of guidelines and principles for the management of scientific data.

11 SEEK platform Web-based resource for sharing heterogeneous scientific research datasets models processes research outcomes manage links between the different objects ISA-tools format is used to describe the research activities Investigations Studies Assays (experiments)

12 ISA standard Investigation project context Ex: Growth control of the eukaryote cell: a systems biology study in yeast A S A I S S Study a unit of research Ex: Study of the impact of changes in flux on the transcriptome under different nutrient limitations Assay analytical measurement Ex: Protein expression profiling using mass spectrometry

13 SEEK objects Objects In Yellow pages Institution Project Pr Pre Activities Presentation Event Biological Experiments Investigation Study Assay S I S S Pre Assets Data file (uploaded and remote) Model (SBM) SOP (protocols) Publications A A D P O Samples Sample Sample type Strain Organism

14 CeSGO integration with GenOuest Scientific portal Infrastructure Collaboration Data Computation User management Data management Infrastructure management Disk storage Cluster Cloud

15 CeSGO integration with GenOuest and beyond Portail scientifique Infrastructure locale E-Infrastructure Collaboration Data Computation User management Data management Infrastructure management Cluster Cloud Community management

16 CeSGO & friends BioDataRing (ABiMS, BiRD, GenOuest) Data replication irods technology compatible with EUDAT BioDataManager (GenOuest) Data Management Plan (DMP) Data management tools Platform Manager (axe bio-imagerie) Integration of these different services creates a dataflow from wet lab to in silico experiments and data sharing.

17 DMP Describe your scientific project Experiment Generate scientific data Analyze Generate scientific results Publish Share data

18 An unique and user friendly web interface using existing technologies: CeSGO and Platform-Manager DMP CeSGO Collab Platform Manager Data Access CeSGO Data Analysis Data Sharing

19 Conclusion

20 CeSGO services

21 PPST Le nouveau dispositif P.P.S.T. de la nation, rénové en 2011, vise à protéger les accès aux savoirs, savoir-faire et technologies les plus "sensibles" des établissements publics et privés, dont le détournement et la captation pourraient : Porter atteinte aux intérêts économiques de la nation, Renforcer des arsenaux militaires étrangers ou affaiblir les capacités de défense de la nation, Contribuer à la prolifération des armes de destruction massive et de leurs vecteurs Etre utilisés à des fins terroristes sur le territoire national et à l étranger. Sa finalité est donc aussi la protection de l emploi, des personnes et des biens.

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